The tigrfams database of protein families
WebThe original TIGRFAMs database was a research project of the J. Craig Venter Institute.TIGRFAMs, short for The Institute for Genomic Research's database of protein … WebThe original TIGRFAMs database was a research project of the J. Craig Venter Institute (JCVI) . TIGRFAMs, short for The Institute for Genomic Research's database of protein families, is a collection of manually curated protein families focusing primarily on prokaryotic sequences.
The tigrfams database of protein families
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WebApr 12, 2024 · The Hypoxia inducible gene domain family member 2A (HIGD2A) protein is indispensable for the assembly of the mitochondrial respiratory supercomplex, which has been implicated in cell proliferation and cell survival under hypoxic conditions. Because the liver has a naturally low oxygen microenvironment, the role of HIGD2A in the development … WebJan 1, 2003 · This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our …
WebQuerying the proteins from Baikal-20-5m-C28 against the NCBI NR database revealed strong similarity between its genome and other aquatic phage genomes (Fig. 6C). Finally, phylogenomic reconstruction based on the Dice method (71) placed Baikal-20- 5m-C28 as a close relative of phage genomes discovered through metagenomics in both marine and … WebA similar approach was implemented for other protein family and domain databases—such as SMART, ProDom, and TIGRFAM—that also use multiple sequence alignment and profile-hidden Markov models. The SMART database is synchronized with UniProt [ 19 ], Ensembl [ 20 ] and STRING databases [ 21 ].
WebHold the cursor over a type above to highlight its positions in the sequence below. WebInterPro consortium member databases. InterPro is the world’s most comprehensive resource for protein family and domain information, but InterPro is only possible due to the amazing classification work of our collaborators. InterPro integrates protein signatures from 13 member databases, which use a variety of different methods to classify ...
WebIdentification of New CRISPR-Associated (Cas) Protein Families In addition to the previously described cas genes (cas1–4), we have detected a number of protein families whose members are found in the vicinity of CRISPRs across multiple prokaryotic species. Hidden Markov models (HMMs) for these families have been constructed and deposited in the
http://www.cucurbitgenomics.org/feature/gene/MELO3C015456 thea thorpeWebUniProtKB reviewed (Swiss-Prot) Organism. Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) Amino acids. 326. Protein existence. Inferred from homology. Annotation score. 2/5. thea thompsonWebFeb 16, 2011 · All sequencing reads were compared against the non-redundant protein database (nr) at NCBI GenBank using BLAST 2.2.18 33 using the E-value cut-off 10 −5 ... The TIGRFAMs database of protein families. Nucleic Acids Res 31: 371–373. View Article Google Scholar 47. Altschul SF, Madden TL ... the at home showWebThe TIGRFAMs database of protein families TIGRFAMs is a collection of manually curated protein families consisting of hidden Markov models (HMMs), multiple... TIGRFAMs … the at home support deskWebDescription Discovery. CRISPR/Cas12a was found by searching a published database of bacterial genetic sequences for promising bits of DNA. Its identification through bioinformatics as a CRISPR system protein, its naming, and a hidden Markov model (HMM) for its detection were provided in 2012 in a release of the TIGRFAMs database of protein … the at home store jobsWebApr 10, 2024 · Pancreatic adenocarcinoma (PAAD) is one of the most leading causes of cancer-related death across the world with the limited efficiency and response rate of immunotherapy. Protein S-palmitoylation, a powerful post-translational lipid modification, is well-known to regulate the stability and cellular distribution of cancer-related proteins, … the good peanut companyWebApr 11, 2024 · The genome was annotated using prokka 1.14.5 [42] with TIGRFAMs, Pfam-A, and HAMAP databases. A set of known OGC GenBank sequences deposited with accession numbers MH449673 to MH449686 ... The orf25 gene with 95% identity with O-antigen ligase family protein from Aeromonas sp. CU5 is assigned to a WaaL encoding gene, ... the good people